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            SpotVerse: Optimizing Bioinformatics Workflows with Multi-Region Spot Instances in Galaxy and BeyondFree, publicly-accessible full text available December 2, 2025
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            Gulhan, Ahmed Burak; Akbulut, Gulsum Gudukbay; Amritkar, Amit; Sampson, Jack; Honovar, Vasant; Focht, Adam; Pavloski, Chuck; Kandemir, Mahmut (, IEEE)This work focuses on forecasting future license usage for high-performance computing environments and using such predictions to improve the effectiveness of job scheduling. Specifically, we propose a model that carries out both short-term and long-term license usage forecasting and a method of using forecasts to improve job scheduling. Our long-term forecasting model achieves a Mean Absolute Percentage Error (MAPE) as low as 0.26 for a 12-month forecast of daily peak license usage. Our job scheduling experimental results also indicate that wasted work from jobs with insufficient licenses can be reduced by up to 92% without increasing the average license-using job completion times, during periods of high license usage, with our proposed license-aware scheduler.more » « less
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            Afgan, Enis; Nekrutenko, Anton; Grüning, Bjórn A; Blankenberg, Daniel; Goecks, Jeremy; Schatz, Michael C; Ostrovsky, Alexander E; Mahmoud, Alexandru; Lonie, Andrew J; Syme, Anna; et al (, Nucleic Acids Research)Abstract Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute to the project, with support from multiple national infrastructure providers that enable freely accessible analysis and training services. The Galaxy Training Network supports free, self-directed, virtual training with >230 integrated tutorials. Project engagement metrics have continued to grow over the last 2 years, including source code contributions, publications, software packages wrapped as tools, registered users and their daily analysis jobs, and new independent specialized servers. Key Galaxy technical developments include an improved user interface for launching large-scale analyses with many files, interactive tools for exploratory data analysis, and a complete suite of machine learning tools. Important scientific developments enabled by Galaxy include Vertebrate Genome Project (VGP) assembly workflows and global SARS-CoV-2 collaborations.more » « less
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